We'll see how to combine code and text into a single R Markdown file, the perfect document format for automated reporting and reproducible research.The. Plus the following categories of annotation package: org.Using R Markdown you'll be able to generate reports straight from your R code, documenting your work - and its results - as an HTML, pdf, slideshow, or Microsoft Word document.

The AMI comes pre-loaded with the latest release version of R, and the following Bioconductor packages (and all their CRAN dependencies): affxparser The AMI contains many packages which can be very difficult to install and configure. You want to run R in your web browser (using RStudio Server). You have a parallelizable task and would like to run it (either on multiple CPUs on a single machine, or in a cluster of many machines). You have a long-running task and you don't want it to tie up the CPU on your own machine. Here are a few reasons you could use it: You do not want to install Bioconductor on your own machine. You can do the math for the cost you will incur on AWS, DO and RStudio for your data size and get to an answer.Īn Amazon Machine Image (AMI) that is optimized for running Bioconductor in the Amazon Elastic Compute Cloud (or EC2) for sequencing tasks. RStudio professional server looks looks to have some good options as well. Your client, most likely would be more comfortable with AWS for its known presence.Īmazon, on the other hand, has wider range of services and lower cost, but far bigger brand and comfort with clients In terms of benefit, you get SSD drives on a low cost, so you can expect good performance from these machines. For example, you will not have a Load balancer available on DO. The cost would be far lower compared to Amazon, but you will not have all the facilities Amazon has. Here is a brief comparison on Digital Ocean (DO) and Amazon Web Services (AWS) based on my experience (though not on hosting a RStudio server):ĭigital Ocean droplets are very easy to set up High performance machines aimed towards developers.

R studio cloud